J4_6XZB_008

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

6XZB|1|A2|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6XZB_008 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0399

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6XZB|1|A2|G|1310
6XZB|1|A2|G|1311
6XZB|1|A2|U|1312
6XZB|1|A2|U|1313
6XZB|1|A2|C|1314
*
6XZB|1|A2|G|1338
6XZB|1|A2|G|1339
6XZB|1|A2|U|1340
6XZB|1|A2|G|1341
6XZB|1|A2|A|1342
6XZB|1|A2|G|1343
*
6XZB|1|A2|C|1404
6XZB|1|A2|U|1405
*
6XZB|1|A2|A|1597
6XZB|1|A2|A|1598
6XZB|1|A2|U|1599
6XZB|1|A2|C|1600
6XZB|1|A2|G|1601
6XZB|1|A2|U|1602
6XZB|1|A2|A|1603
6XZB|1|A2|C|1604

Current chains

Chain A2

23S rRNA

Nearby chains

Chain T2

50S ribosomal protein L23

Chain c2

50S ribosomal protein L34