J4_6Y0G_005

3D structure

PDB id

6Y0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in classical-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUC*GCC*GCGCGC*GGCGGAGCG

Length

21 nucleotides

Bulged bases

6Y0G|1|L5|G|1266, 6Y0G|1|L5|G|1271, 6Y0G|1|L5|C|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Y0G|1|L5|C|981
6Y0G|1|L5|U|982
6Y0G|1|L5|C|983
*
6Y0G|1|L5|G|1070
6Y0G|1|L5|C|1071
6Y0G|1|L5|C|1072
*
6Y0G|1|L5|G|1240
6Y0G|1|L5|C|1241
6Y0G|1|L5|G|1242
6Y0G|1|L5|C|1243
6Y0G|1|L5|G|1244
6Y0G|1|L5|C|1245
*
6Y0G|1|L5|G|1265
6Y0G|1|L5|G|1266
6Y0G|1|L5|C|1267
6Y0G|1|L5|G|1268
6Y0G|1|L5|G|1269
6Y0G|1|L5|A|1270
6Y0G|1|L5|G|1271
6Y0G|1|L5|C|1272
6Y0G|1|L5|G|1273

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LF

60S ribosomal protein L7