J4_6Y57_004

3D structure

PDB id

6Y57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in hybrid-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUC*GCC*GCGCGCG*CGGCGGAGCG

Length

23 nucleotides

Bulged bases

6Y57|1|L5|G|1266, 6Y57|1|L5|G|1271, 6Y57|1|L5|C|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Y57|1|L5|C|981
6Y57|1|L5|U|982
6Y57|1|L5|C|983
*
6Y57|1|L5|G|1070
6Y57|1|L5|C|1071
6Y57|1|L5|C|1072
*
6Y57|1|L5|G|1240
6Y57|1|L5|C|1241
6Y57|1|L5|G|1242
6Y57|1|L5|C|1243
6Y57|1|L5|G|1244
6Y57|1|L5|C|1245
6Y57|1|L5|G|1246
*
6Y57|1|L5|C|1264
6Y57|1|L5|G|1265
6Y57|1|L5|G|1266
6Y57|1|L5|C|1267
6Y57|1|L5|G|1268
6Y57|1|L5|G|1269
6Y57|1|L5|A|1270
6Y57|1|L5|G|1271
6Y57|1|L5|C|1272
6Y57|1|L5|G|1273

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LF

60S ribosomal protein L7