J4_6Y57_010

3D structure

PDB id

6Y57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in hybrid-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUG*CGG*UCUUAAGGUAG*UGAAUG

Length

23 nucleotides

Bulged bases

6Y57|1|L5|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Y57|1|L5|C|3696
6Y57|1|L5|U|3697
6Y57|1|L5|G|3698
*
6Y57|1|L5|C|3752
6Y57|1|L5|G|3753
6Y57|1|L5|G|3754
*
6Y57|1|L5|U|3770
6Y57|1|L5|C|3771
6Y57|1|L5|U|3772
6Y57|1|L5|U|3773
6Y57|1|L5|A|3774
6Y57|1|L5|A|3775
6Y57|1|L5|G|3776
6Y57|1|L5|G|3777
6Y57|1|L5|U|3778
6Y57|1|L5|A|3779
6Y57|1|L5|G|3780
*
6Y57|1|L5|U|3814
6Y57|1|L5|G|3815
6Y57|1|L5|A|3816
6Y57|1|L5|A|3817
6Y57|1|L5|U|3818
6Y57|1|L5|G|3819

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain B4

Transfer RNA; tRNA

Chain LA

60S ribosomal protein L8

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA