J4_6Y57_012

3D structure

PDB id

6Y57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in hybrid-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUAAG*UUGAU*ACC*GGG

Length

16 nucleotides

Bulged bases

6Y57|1|L5|A|4234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6Y57_012 not in the Motif Atlas

Homologous match to J4_8C3A_008

Geometric discrepancy: 0.1914

The information below is about J4_8C3A_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Y57|1|L5|C|4231
6Y57|1|L5|U|4232
6Y57|1|L5|A|4233
6Y57|1|L5|A|4234
6Y57|1|L5|G|4235
*
6Y57|1|L5|U|4289
6Y57|1|L5|U|4290
6Y57|1|L5|G|4291
6Y57|1|L5|A|4292
6Y57|1|L5|U|4293
*
6Y57|1|L5|A|4317
6Y57|1|L5|C|4318
6Y57|1|L5|C|4319
*
6Y57|1|L5|G|4328
6Y57|1|L5|G|4329
6Y57|1|L5|G|4330

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LD

60S ribosomal protein L5

Chain LT

60S ribosomal protein L21

Chain Lo

60S ribosomal protein L36a