J4_6Y69_008

3D structure

PDB id

6Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinX

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

6Y69|1|A|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6Y69_008 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1503

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

6Y69|1|A|C|1833
6Y69|1|A|U|1834
6Y69|1|A|G|1835
*
6Y69|1|A|C|1905
6Y69|1|A|G|1906
*
6Y69|1|A|C|1924
6Y69|1|A|C|1925
6Y69|1|A|U|1926
6Y69|1|A|A|1927
6Y69|1|A|A|1928
6Y69|1|A|G|1929
6Y69|1|A|G|1930
6Y69|1|A|U|1931
6Y69|1|A|A|1932
6Y69|1|A|G|1933
*
6Y69|1|A|C|1967
6Y69|1|A|G|1968
6Y69|1|A|A|1969
6Y69|1|A|A|1970
6Y69|1|A|U|1971
6Y69|1|A|G|1972

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA