J4_6Y69_014
3D structure
- PDB id
- 6Y69 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinX
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- GUGG*CGUC*GAAGAUCG*CC
- Length
- 18 nucleotides
- Bulged bases
- 6Y69|1|w|U|8, 6Y69|1|w|U|47, 6Y69|1|w|C|48
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6Y69_014 not in the Motif Atlas
- Homologous match to J4_5WWT_001
- Geometric discrepancy: 0.2771
- The information below is about J4_5WWT_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_65285.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
6Y69|1|w|G|7
6Y69|1|w|U|8
6Y69|1|w|G|9
6Y69|1|w|G|10
*
6Y69|1|w|C|25
6Y69|1|w|G|26
6Y69|1|w|U|27
6Y69|1|w|C|28
*
6Y69|1|w|G|42
6Y69|1|w|A|43
6Y69|1|w|A|44
6Y69|1|w|G|45
6Y69|1|w|A|46
6Y69|1|w|U|47
6Y69|1|w|C|48
6Y69|1|w|G|49
*
6Y69|1|w|C|65
6Y69|1|w|C|66
Current chains
- Chain w
- E-site tRNA
Nearby chains
- Chain 1
- 50S ribosomal protein L33
- Chain g
- 30S ribosomal protein S7
Coloring options: