J4_6Y6X_002

3D structure

PDB id

6Y6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracenomycin X bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

6Y6X|1|L5|A|218, 6Y6X|1|L5|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Y6X|1|L5|C|196
6Y6X|1|L5|A|197
6Y6X|1|L5|A|198
6Y6X|1|L5|G|199
*
6Y6X|1|L5|C|215
6Y6X|1|L5|C|216
6Y6X|1|L5|C|217
6Y6X|1|L5|A|218
6Y6X|1|L5|G|219
6Y6X|1|L5|C|220
6Y6X|1|L5|C|221
6Y6X|1|L5|C|222
*
6Y6X|1|L5|G|226
6Y6X|1|L5|A|227
6Y6X|1|L5|C|228
*
6Y6X|1|L5|G|240
6Y6X|1|L5|G|241
6Y6X|1|L5|U|242
6Y6X|1|L5|A|243
6Y6X|1|L5|G|244

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26