J4_6Y6X_003

3D structure

PDB id

6Y6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracenomycin X bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUC*GCC*GCGC*GGAGCG

Length

16 nucleotides

Bulged bases

6Y6X|1|L5|G|1271, 6Y6X|1|L5|C|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Y6X|1|L5|C|981
6Y6X|1|L5|U|982
6Y6X|1|L5|C|983
*
6Y6X|1|L5|G|1070
6Y6X|1|L5|C|1071
6Y6X|1|L5|C|1072
*
6Y6X|1|L5|G|1240
6Y6X|1|L5|C|1241
6Y6X|1|L5|G|1242
6Y6X|1|L5|C|1243
*
6Y6X|1|L5|G|1268
6Y6X|1|L5|G|1269
6Y6X|1|L5|A|1270
6Y6X|1|L5|G|1271
6Y6X|1|L5|C|1272
6Y6X|1|L5|G|1273

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LF

60S ribosomal protein L7

Chain Lb

60S ribosomal protein L29