J4_6Y6X_008

3D structure

PDB id

6Y6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracenomycin X bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

6Y6X|1|L5|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6Y6X_008 not in the Motif Atlas

Homologous match to J4_8C3A_007

Geometric discrepancy: 0.1124

The information below is about J4_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Y6X|1|L5|C|3696
6Y6X|1|L5|U|3697
6Y6X|1|L5|G|3698
*
6Y6X|1|L5|C|3752
6Y6X|1|L5|G|3753
*
6Y6X|1|L5|C|3771
6Y6X|1|L5|U|3772
6Y6X|1|L5|U|3773
6Y6X|1|L5|A|3774
6Y6X|1|L5|A|3775
6Y6X|1|L5|G|3776
6Y6X|1|L5|G|3777
6Y6X|1|L5|U|3778
6Y6X|1|L5|A|3779
6Y6X|1|L5|G|3780
*
6Y6X|1|L5|U|3814
6Y6X|1|L5|G|3815
6Y6X|1|L5|A|3816
6Y6X|1|L5|A|3817
6Y6X|1|L5|U|3818
6Y6X|1|L5|G|3819

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Ln

60S ribosomal protein L41