J4_6Y6X_010
3D structure
- PDB id
- 6Y6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Tetracenomycin X bound to the human ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUAAG*UUGAU*ACC*GGG
- Length
- 16 nucleotides
- Bulged bases
- 6Y6X|1|L5|A|4234
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6Y6X_010 not in the Motif Atlas
- Homologous match to J4_8C3A_008
- Geometric discrepancy: 0.1729
- The information below is about J4_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Y6X|1|L5|C|4231
6Y6X|1|L5|U|4232
6Y6X|1|L5|A|4233
6Y6X|1|L5|A|4234
6Y6X|1|L5|G|4235
*
6Y6X|1|L5|U|4289
6Y6X|1|L5|U|4290
6Y6X|1|L5|G|4291
6Y6X|1|L5|A|4292
6Y6X|1|L5|U|4293
*
6Y6X|1|L5|A|4317
6Y6X|1|L5|C|4318
6Y6X|1|L5|C|4319
*
6Y6X|1|L5|G|4328
6Y6X|1|L5|G|4329
6Y6X|1|L5|G|4330
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LD
- 60S ribosomal protein L5
- Chain LT
- 60S ribosomal protein L21
- Chain Lb
- 60S ribosomal protein L29
- Chain Lo
- 60S ribosomal protein L36a
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