J4_6YAN_001
3D structure
- PDB id
- 6YAN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 48S late-stage translation initiation complex with histone 4 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.48 Å
Loop
- Sequence
- GUGG*UGC*GAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 6YAN|1|1|U|9, 6YAN|1|1|G|10, 6YAN|1|1|G|45, 6YAN|1|1|G|46, 6YAN|1|1|U|47, 6YAN|1|1|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6YAN|1|1|G|8
6YAN|1|1|U|9
6YAN|1|1|G|10
6YAN|1|1|G|11
*
6YAN|1|1|U|25
6YAN|1|1|G|26
6YAN|1|1|C|27
*
6YAN|1|1|G|43
6YAN|1|1|A|44
6YAN|1|1|G|45
6YAN|1|1|G|46
6YAN|1|1|U|47
6YAN|1|1|C|48
6YAN|1|1|G|49
*
6YAN|1|1|C|65
6YAN|1|1|C|66
Current chains
- Chain 1
- initiator methionylated tRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain A
- Eukaryotic translation initiation factor 2 subunit 1
Coloring options: