J4_6YDW_001

3D structure

PDB id

6YDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CAAG*CGCCCCGG*CAC*GAAACAG

Length

22 nucleotides

Bulged bases

6YDW|1|AA|C|171

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YDW|1|AA|C|52
6YDW|1|AA|A|53
6YDW|1|AA|A|54
6YDW|1|AA|G|55
*
6YDW|1|AA|C|62
6YDW|1|AA|G|63
6YDW|1|AA|C|64
6YDW|1|AA|C|65
6YDW|1|AA|C|66
6YDW|1|AA|C|67
6YDW|1|AA|G|68
6YDW|1|AA|G|69
*
6YDW|1|AA|C|156
6YDW|1|AA|A|157
6YDW|1|AA|C|158
*
6YDW|1|AA|G|167
6YDW|1|AA|A|168
6YDW|1|AA|A|169
6YDW|1|AA|A|170
6YDW|1|AA|C|171
6YDW|1|AA|A|172
6YDW|1|AA|G|173

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AP

28S ribosomal protein S16, mitochondrial

Chain Ad

Mitochondrial ribosomal protein S26

Chain Aj

mS34

Chain BO

Uncharacterized protein

Chain BT

Mitochondrial ribosomal protein L19