J4_6YDW_005

3D structure

PDB id

6YDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GUCA*UAUC*GAAAAUGUUG*CUUCC

Length

23 nucleotides

Bulged bases

6YDW|1|AY|U|8, 6YDW|1|AY|U|44

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YDW|1|AY|G|7
6YDW|1|AY|U|8
6YDW|1|AY|C|9
6YDW|1|AY|A|10
*
6YDW|1|AY|U|22
6YDW|1|AY|A|23
6YDW|1|AY|U|24
6YDW|1|AY|C|25
*
6YDW|1|AY|G|39
6YDW|1|AY|A|40
6YDW|1|AY|A|41
6YDW|1|AY|A|42
6YDW|1|AY|A|43
6YDW|1|AY|U|44
6YDW|1|AY|G|45
6YDW|1|AY|U|46
6YDW|1|AY|U|47
6YDW|1|AY|G|48
*
6YDW|1|AY|C|57
6YDW|1|AY|U|58
6YDW|1|AY|U|59
6YDW|1|AY|C|60
6YDW|1|AY|C|61

Current chains

Chain AY

tRNAMet

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AV

tRNAMet

Chain B6

Uncharacterized protein

Chain Bv

Uncharacterized protein