J4_6YDW_006

3D structure

PDB id

6YDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CAAG*CU*AAAG*CAG

Length

13 nucleotides

Bulged bases

6YDW|1|BA|A|650, 6YDW|1|BA|A|782, 6YDW|1|BA|A|783

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YDW|1|BA|C|648
6YDW|1|BA|A|649
6YDW|1|BA|A|650
6YDW|1|BA|G|651
*
6YDW|1|BA|C|660
6YDW|1|BA|U|661
*
6YDW|1|BA|A|781
6YDW|1|BA|A|782
6YDW|1|BA|A|783
6YDW|1|BA|G|784
*
6YDW|1|BA|C|1003
6YDW|1|BA|A|1004
6YDW|1|BA|G|1005

Current chains

Chain BA

12S rRNA

Nearby chains

Chain B5

Uncharacterized protein

Chain BR

Uncharacterized protein

Chain BW

Uncharacterized protein

Chain Bw

39S ribosomal protein S30, mitochondrial