J4_6YDW_008

3D structure

PDB id

6YDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GCCUG*CAUCAC*GCAAUG*CCACAC

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YDW|1|BA|G|824
6YDW|1|BA|C|825
6YDW|1|BA|C|826
6YDW|1|BA|U|827
6YDW|1|BA|G|828
*
6YDW|1|BA|C|840
6YDW|1|BA|A|841
6YDW|1|BA|U|842
6YDW|1|BA|C|843
6YDW|1|BA|A|844
6YDW|1|BA|C|845
*
6YDW|1|BA|G|869
6YDW|1|BA|C|870
6YDW|1|BA|A|871
6YDW|1|BA|A|872
6YDW|1|BA|U|873
6YDW|1|BA|G|874
*
6YDW|1|BA|C|969
6YDW|1|BA|C|970
6YDW|1|BA|A|971
6YDW|1|BA|C|972
6YDW|1|BA|A|973
6YDW|1|BA|C|974

Current chains

Chain BA

12S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain An

Aurora kinase A interacting protein 1

Chain BD

Uncharacterized protein