J4_6YDW_009
3D structure
- PDB id
- 6YDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CUG*CC*GCAAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 6YDW|1|BA|U|966
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6YDW_009 not in the Motif Atlas
- Homologous match to J4_9DFE_008
- Geometric discrepancy: 0.1726
- The information below is about J4_9DFE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
6YDW|1|BA|C|876
6YDW|1|BA|U|877
6YDW|1|BA|G|878
*
6YDW|1|BA|C|901
6YDW|1|BA|C|902
*
6YDW|1|BA|G|919
6YDW|1|BA|C|920
6YDW|1|BA|A|921
6YDW|1|BA|A|922
6YDW|1|BA|A|923
6YDW|1|BA|G|924
6YDW|1|BA|G|925
6YDW|1|BA|U|926
6YDW|1|BA|A|927
6YDW|1|BA|G|928
*
6YDW|1|BA|U|962
6YDW|1|BA|G|963
6YDW|1|BA|A|964
6YDW|1|BA|A|965
6YDW|1|BA|U|966
6YDW|1|BA|G|967
Current chains
- Chain BA
- 12S rRNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AV
- tRNAMet
- Chain An
- Aurora kinase A interacting protein 1
- Chain BD
- Uncharacterized protein
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