J4_6YEF_003

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAG*CGUAG*CGAG*CGUUUAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6YEF_003 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.4486

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

6YEF|1|A|C|644
6YEF|1|A|A|645
6YEF|1|A|A|646
6YEF|1|A|G|647
*
6YEF|1|A|C|669
6YEF|1|A|G|670
6YEF|1|A|U|671
6YEF|1|A|A|672
6YEF|1|A|G|673
*
6YEF|1|A|C|680
6YEF|1|A|G|681
6YEF|1|A|A|682
6YEF|1|A|G|683
*
6YEF|1|A|C|695
6YEF|1|A|G|696
6YEF|1|A|U|697
6YEF|1|A|U|698
6YEF|1|A|U|699
6YEF|1|A|A|700
6YEF|1|A|G|701

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L35

Chain F

50S ribosomal protein L4

Chain O

50S ribosomal protein L15