J4_6YEF_008

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAAG

Length

21 nucleotides

Bulged bases

6YEF|1|A|A|1998

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6YEF_008 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1081

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

6YEF|1|A|C|1860
6YEF|1|A|U|1861
6YEF|1|A|G|1862
*
6YEF|1|A|C|1932
6YEF|1|A|G|1933
*
6YEF|1|A|C|1951
6YEF|1|A|C|1952
6YEF|1|A|U|1953
6YEF|1|A|A|1954
6YEF|1|A|A|1955
6YEF|1|A|G|1956
6YEF|1|A|G|1957
6YEF|1|A|U|1958
6YEF|1|A|A|1959
6YEF|1|A|G|1960
*
6YEF|1|A|C|1994
6YEF|1|A|G|1995
6YEF|1|A|A|1996
6YEF|1|A|A|1997
6YEF|1|A|A|1998
6YEF|1|A|G|1999

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA

Chain x

Transfer RNA; tRNA