J4_6YEF_012

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAC*GAUAAUAUUUUGAA*UCAAAAGUGAAAG*CAC

Length

33 nucleotides

Bulged bases

6YEF|1|a|A|182, 6YEF|1|a|U|183, 6YEF|1|a|A|184, 6YEF|1|a|A|204, 6YEF|1|a|A|212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YEF|1|a|G|142
6YEF|1|a|A|143
6YEF|1|a|C|144
*
6YEF|1|a|G|178
6YEF|1|a|A|179
6YEF|1|a|U|180
6YEF|1|a|A|181
6YEF|1|a|A|182
6YEF|1|a|U|183
6YEF|1|a|A|184
6YEF|1|a|U|185
6YEF|1|a|U|186
6YEF|1|a|U|187
6YEF|1|a|U|188
6YEF|1|a|G|189
6YEF|1|a|A|190
6YEF|1|a|A|191
*
6YEF|1|a|U|201
6YEF|1|a|C|202
6YEF|1|a|A|203
6YEF|1|a|A|204
6YEF|1|a|A|205
6YEF|1|a|A|206
6YEF|1|a|G|207
6YEF|1|a|U|208
6YEF|1|a|G|209
6YEF|1|a|A|210
6YEF|1|a|A|211
6YEF|1|a|A|212
6YEF|1|a|G|213
*
6YEF|1|a|C|227
6YEF|1|a|A|228
6YEF|1|a|C|229

Current chains

Chain a

16S rRNA

Nearby chains

Chain t

30S ribosomal protein S20