J4_6YHS_002
3D structure
- PDB id
- 6YHS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-amikacin complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GGAAC*GAAC*GAG*CGUAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6YHS_002 not in the Motif Atlas
- Homologous match to J4_5J7L_019
- Geometric discrepancy: 0.0925
- The information below is about J4_5J7L_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_71729.5
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
6YHS|1|1|G|292
6YHS|1|1|G|293
6YHS|1|1|A|294
6YHS|1|1|A|295
6YHS|1|1|C|296
*
6YHS|1|1|G|311
6YHS|1|1|A|312
6YHS|1|1|A|313
6YHS|1|1|C|314
*
6YHS|1|1|G|318
6YHS|1|1|A|319
6YHS|1|1|G|320
*
6YHS|1|1|C|332
6YHS|1|1|G|333
6YHS|1|1|U|334
6YHS|1|1|A|335
6YHS|1|1|C|336
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L4
- Chain Q
- 50S ribosomal protein L24
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