J4_6YHS_005

3D structure

PDB id

6YHS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

6YHS|1|1|G|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6YHS_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0876

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6YHS|1|1|G|1298
6YHS|1|1|G|1299
6YHS|1|1|U|1300
6YHS|1|1|U|1301
6YHS|1|1|C|1302
*
6YHS|1|1|G|1326
6YHS|1|1|G|1327
6YHS|1|1|U|1328
6YHS|1|1|G|1329
6YHS|1|1|A|1330
6YHS|1|1|G|1331
*
6YHS|1|1|C|1392
6YHS|1|1|U|1393
*
6YHS|1|1|A|1588
6YHS|1|1|A|1589
6YHS|1|1|U|1590
6YHS|1|1|C|1591
6YHS|1|1|G|1592
6YHS|1|1|U|1593
6YHS|1|1|A|1594
6YHS|1|1|C|1595

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L23

Chain Z

50S ribosomal protein L34