J4_6YHS_008

3D structure

PDB id

6YHS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

6YHS|1|1|U|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6YHS_008 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1118

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

6YHS|1|1|C|1822
6YHS|1|1|U|1823
6YHS|1|1|G|1824
*
6YHS|1|1|C|1894
6YHS|1|1|G|1895
*
6YHS|1|1|C|1913
6YHS|1|1|C|1914
6YHS|1|1|U|1915
6YHS|1|1|A|1916
6YHS|1|1|A|1917
6YHS|1|1|G|1918
6YHS|1|1|G|1919
6YHS|1|1|U|1920
6YHS|1|1|A|1921
6YHS|1|1|G|1922
*
6YHS|1|1|C|1956
6YHS|1|1|G|1957
6YHS|1|1|A|1958
6YHS|1|1|A|1959
6YHS|1|1|U|1960
6YHS|1|1|G|1961

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2