J4_6YSI_002
3D structure
- PDB id
- 6YSI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GGAAC*GAAC*GAG*CGUAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6YSI_002 not in the Motif Atlas
- Homologous match to J4_4WF9_002
- Geometric discrepancy: 0.0862
- The information below is about J4_4WF9_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_16174.1
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
6YSI|1|1|G|292
6YSI|1|1|G|293
6YSI|1|1|A|294
6YSI|1|1|A|295
6YSI|1|1|C|296
*
6YSI|1|1|G|311
6YSI|1|1|A|312
6YSI|1|1|A|313
6YSI|1|1|C|314
*
6YSI|1|1|G|318
6YSI|1|1|A|319
6YSI|1|1|G|320
*
6YSI|1|1|C|332
6YSI|1|1|G|333
6YSI|1|1|U|334
6YSI|1|1|A|335
6YSI|1|1|C|336
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L4
- Chain Q
- 50S ribosomal protein L24
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