J4_6YSI_003
3D structure
- PDB id
- 6YSI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CGAG*CGUAG*CGAG*CGUUUAG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6YSI_003 not in the Motif Atlas
- Homologous match to J4_5J7L_020
- Geometric discrepancy: 0.3173
- The information below is about J4_5J7L_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_60168.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6YSI|1|1|C|592
6YSI|1|1|G|593
6YSI|1|1|A|594
6YSI|1|1|G|595
*
6YSI|1|1|C|615
6YSI|1|1|G|616
6YSI|1|1|U|617
6YSI|1|1|A|618
6YSI|1|1|G|619
*
6YSI|1|1|C|626
6YSI|1|1|G|627
6YSI|1|1|A|628
6YSI|1|1|G|629
*
6YSI|1|1|C|641
6YSI|1|1|G|642
6YSI|1|1|U|643
6YSI|1|1|U|644
6YSI|1|1|U|645
6YSI|1|1|A|646
6YSI|1|1|G|647
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L4
- Chain H
- 50S ribosomal protein L15
- Chain a
- 50S ribosomal protein L35
Coloring options: