J4_6YSI_005

3D structure

PDB id

6YSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

6YSI|1|1|G|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6YSI_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0754

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6YSI|1|1|G|1298
6YSI|1|1|G|1299
6YSI|1|1|U|1300
6YSI|1|1|U|1301
6YSI|1|1|C|1302
*
6YSI|1|1|G|1326
6YSI|1|1|G|1327
6YSI|1|1|U|1328
6YSI|1|1|G|1329
6YSI|1|1|A|1330
6YSI|1|1|G|1331
*
6YSI|1|1|C|1392
6YSI|1|1|U|1393
*
6YSI|1|1|A|1588
6YSI|1|1|A|1589
6YSI|1|1|U|1590
6YSI|1|1|C|1591
6YSI|1|1|G|1592
6YSI|1|1|U|1593
6YSI|1|1|A|1594
6YSI|1|1|C|1595

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L23

Chain Z

50S ribosomal protein L34