J4_6YSR_007
3D structure
- PDB id
- 6YSR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the P+9 stalled ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AACUG*CACAG*UGAC*GUAAU
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6YSR_007 not in the Motif Atlas
- Homologous match to J4_9DFE_007
- Geometric discrepancy: 0.0625
- The information below is about J4_9DFE_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61477.5
- Basepair signature
- cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
6YSR|1|A|A|1772
6YSR|1|A|A|1773
6YSR|1|A|C|1774
6YSR|1|A|U|1775
6YSR|1|A|G|1776
*
6YSR|1|A|C|1788
6YSR|1|A|A|1789
6YSR|1|A|C|1790
6YSR|1|A|A|1791
6YSR|1|A|G|1792
*
6YSR|1|A|U|1827
6YSR|1|A|G|1828
6YSR|1|A|A|1829
6YSR|1|A|C|1830
*
6YSR|1|A|G|1975
6YSR|1|A|U|1976
6YSR|1|A|A|1977
6YSR|1|A|A|1978
6YSR|1|A|U|1979
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: