J4_6YSS_012

3D structure

PDB id

6YSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAGGG*CGCAUAACG*CCAAAG*UGC

Length

23 nucleotides

Bulged bases

6YSS|1|a|C|183, 6YSS|1|a|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YSS|1|a|G|142
6YSS|1|a|A|143
6YSS|1|a|G|144
6YSS|1|a|G|145
6YSS|1|a|G|146
*
6YSS|1|a|C|176
6YSS|1|a|G|177
6YSS|1|a|C|178
6YSS|1|a|A|179
6YSS|1|a|U|180
6YSS|1|a|A|181
6YSS|1|a|A|182
6YSS|1|a|C|183
6YSS|1|a|G|184
*
6YSS|1|a|C|193
6YSS|1|a|C|194
6YSS|1|a|A|195
6YSS|1|a|A|196
6YSS|1|a|A|197
6YSS|1|a|G|198
*
6YSS|1|a|U|219
6YSS|1|a|G|220
6YSS|1|a|C|221

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20