J4_6YST_014

3D structure

PDB id

6YST (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GA(4SU)AG*CAG*CGU(G7M)UCC*GUC

Length

18 nucleotides

Bulged bases

6YST|1|w|4SU|8, 6YST|1|w|U|47, 6YST|1|w|C|48

QA status

Modified nucleotides: 4SU, G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6YST_014 not in the Motif Atlas

Homologous match to J4_3AMU_001

Geometric discrepancy: 0.3794

The information below is about J4_3AMU_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YST|1|w|G|6
6YST|1|w|A|7
6YST|1|w|4SU|8
6YST|1|w|A|9
6YST|1|w|G|10
*
6YST|1|w|C|25
6YST|1|w|A|26
6YST|1|w|G|27
*
6YST|1|w|C|43
6YST|1|w|G|44
6YST|1|w|U|45
6YST|1|w|G7M|46
6YST|1|w|U|47
6YST|1|w|C|48
6YST|1|w|C|49
*
6YST|1|w|G|65
6YST|1|w|U|66
6YST|1|w|C|67

Current chains

Chain w

P/E-site tRNAPhe

Nearby chains

Chain 1

50S ribosomal protein L33

Chain a

Small subunit ribosomal RNA; SSU rRNA

Chain m

30S ribosomal protein S13