J4_6YT9_002

3D structure

PDB id

6YT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UG*CAUACGU*AGAAAG*CG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YT9|1|2|U|139
6YT9|1|2|G|140
*
6YT9|1|2|C|174
6YT9|1|2|A|175
6YT9|1|2|U|176
6YT9|1|2|A|177
6YT9|1|2|C|178
6YT9|1|2|G|179
6YT9|1|2|U|180
*
6YT9|1|2|A|189
6YT9|1|2|G|190
6YT9|1|2|A|191
6YT9|1|2|A|192
6YT9|1|2|A|193
6YT9|1|2|G|194
*
6YT9|1|2|C|215
6YT9|1|2|G|216

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 4

Small subunit ribosomal RNA; SSU rRNA

Chain u

30S ribosomal protein S20