J4_6Z1P_006

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCUG*CG*CCUAAGGUAGC*GCAUGAAUGG

Length

27 nucleotides

Bulged bases

6Z1P|1|Ab|U|1690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Z1P|1|Ab|C|1559
6Z1P|1|Ab|C|1560
6Z1P|1|Ab|U|1561
6Z1P|1|Ab|G|1562
*
6Z1P|1|Ab|C|1624
6Z1P|1|Ab|G|1625
*
6Z1P|1|Ab|C|1643
6Z1P|1|Ab|C|1644
6Z1P|1|Ab|U|1645
6Z1P|1|Ab|A|1646
6Z1P|1|Ab|A|1647
6Z1P|1|Ab|G|1648
6Z1P|1|Ab|G|1649
6Z1P|1|Ab|U|1650
6Z1P|1|Ab|A|1651
6Z1P|1|Ab|G|1652
6Z1P|1|Ab|C|1653
*
6Z1P|1|Ab|G|1683
6Z1P|1|Ab|C|1684
6Z1P|1|Ab|A|1685
6Z1P|1|Ab|U|1686
6Z1P|1|Ab|G|1687
6Z1P|1|Ab|A|1688
6Z1P|1|Ab|A|1689
6Z1P|1|Ab|U|1690
6Z1P|1|Ab|G|1691
6Z1P|1|Ab|G|1692

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain Ac

Ribosomal protein L2

Chain BC

mS38

Chain Bb

Small subunit ribosomal RNA; SSU rRNA