J4_6Z1P_009

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAGUAAUAU*ACA*UUAG*CC

Length

18 nucleotides

Bulged bases

6Z1P|1|Ba|U|143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Z1P|1|Ba|G|137
6Z1P|1|Ba|A|138
6Z1P|1|Ba|G|139
6Z1P|1|Ba|U|140
6Z1P|1|Ba|A|141
6Z1P|1|Ba|A|142
6Z1P|1|Ba|U|143
6Z1P|1|Ba|A|144
6Z1P|1|Ba|U|145
*
6Z1P|1|Bb|A|244
6Z1P|1|Bb|C|245
6Z1P|1|Bb|A|246
*
6Z1P|1|Bb|U|311
6Z1P|1|Bb|U|312
6Z1P|1|Bb|A|313
6Z1P|1|Bb|G|314
*
6Z1P|1|Bb|C|336
6Z1P|1|Bb|C|337

Current chains

Chain Ba

SSU rRNA_1

Chain Bb

SSU rRNA_2

Nearby chains

Chain Bl

Ribosomal protein S12

Chain Bo

30S ribosomal protein S15

Chain Bp

30S ribosomal protein S16

Chain Bq

30S ribosomal protein S17