J4_6Z1P_011
3D structure
- PDB id
- 6Z1P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mitochondrial ribosome from Tetrahymena thermophila
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UGUAUUAAA*UGAAAG*CUGUAAAAGAUG*CUA
- Length
- 30 nucleotides
- Bulged bases
- 6Z1P|1|Bb|A|567, 6Z1P|1|Bb|U|568, 6Z1P|1|Bb|U|569, 6Z1P|1|Bb|A|571, 6Z1P|1|Bb|A|804
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Z1P|1|Bb|U|564
6Z1P|1|Bb|G|565
6Z1P|1|Bb|U|566
6Z1P|1|Bb|A|567
6Z1P|1|Bb|U|568
6Z1P|1|Bb|U|569
6Z1P|1|Bb|A|570
6Z1P|1|Bb|A|571
6Z1P|1|Bb|A|572
*
6Z1P|1|Bb|U|753
6Z1P|1|Bb|G|754
6Z1P|1|Bb|A|755
6Z1P|1|Bb|A|756
6Z1P|1|Bb|A|757
6Z1P|1|Bb|G|758
*
6Z1P|1|Bb|C|799
6Z1P|1|Bb|U|800
6Z1P|1|Bb|G|801
6Z1P|1|Bb|U|802
6Z1P|1|Bb|A|803
6Z1P|1|Bb|A|804
6Z1P|1|Bb|A|805
6Z1P|1|Bb|A|806
6Z1P|1|Bb|G|807
6Z1P|1|Bb|A|808
6Z1P|1|Bb|U|809
6Z1P|1|Bb|G|810
*
6Z1P|1|Bb|C|857
6Z1P|1|Bb|U|858
6Z1P|1|Bb|A|859
Current chains
- Chain Bb
- SSU rRNA_2
Nearby chains
- Chain BC
- mS38
- Chain Ba
- SSU rRNA_1
- Chain Bf
- 30S ribosomal protein S5
- Chain Bo
- 30S ribosomal protein S15
- Chain Bq
- 30S ribosomal protein S17
- Chain Bt
- bS21m
Coloring options: