J4_6Z6J_004
3D structure
- PDB id
- 6Z6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GGUUC*GGUUAG*CC*GGUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 6Z6J|1|C1|U|1523
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Z6J|1|C1|G|1492
6Z6J|1|C1|G|1493
6Z6J|1|C1|U|1494
6Z6J|1|C1|U|1495
6Z6J|1|C1|C|1496
*
6Z6J|1|C1|G|1520
6Z6J|1|C1|G|1521
6Z6J|1|C1|U|1522
6Z6J|1|C1|U|1523
6Z6J|1|C1|A|1524
6Z6J|1|C1|G|1525
*
6Z6J|1|C1|C|1614
6Z6J|1|C1|C|1615
*
6Z6J|1|C1|G|1829
6Z6J|1|C1|G|1830
6Z6J|1|C1|U|1831
6Z6J|1|C1|C|1832
6Z6J|1|C1|G|1833
6Z6J|1|C1|U|1834
6Z6J|1|C1|A|1835
6Z6J|1|C1|C|1836
Current chains
- Chain C1
- 25S rRNA
Nearby chains
- Chain C3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LR
- 60S ribosomal protein L19-A
- Chain LX
- 60S ribosomal protein L25
- Chain Lg
- 60S ribosomal protein L34-A
- Chain Lj
- 60S ribosomal protein L37-A
- Chain Lk
- 60S ribosomal protein L38
- Chain Ll
- 60S ribosomal protein L39
Coloring options: