J4_6Z6K_008
3D structure
- PDB id
- 6Z6K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 6Z6K|1|C1|U|2314
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6Z6K_008 not in the Motif Atlas
- Homologous match to J4_8C3A_007
- Geometric discrepancy: 0.0997
- The information below is about J4_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Z6K|1|C1|C|2192
6Z6K|1|C1|U|2193
6Z6K|1|C1|G|2194
*
6Z6K|1|C1|C|2248
6Z6K|1|C1|G|2249
*
6Z6K|1|C1|C|2267
6Z6K|1|C1|U|2268
6Z6K|1|C1|U|2269
6Z6K|1|C1|A|2270
6Z6K|1|C1|A|2271
6Z6K|1|C1|G|2272
6Z6K|1|C1|G|2273
6Z6K|1|C1|U|2274
6Z6K|1|C1|A|2275
6Z6K|1|C1|G|2276
*
6Z6K|1|C1|U|2310
6Z6K|1|C1|G|2311
6Z6K|1|C1|A|2312
6Z6K|1|C1|A|2313
6Z6K|1|C1|U|2314
6Z6K|1|C1|G|2315
Current chains
- Chain C1
- 25S rRNA
Nearby chains
- Chain C2
- Small subunit ribosomal RNA; SSU rRNA
- Chain C5
- Protein LSO2
- Chain LA
- 60S ribosomal protein L2-A
- Chain Ln
- 60S ribosomal protein L41-A
Coloring options: