J4_6Z6K_009

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUAAG*UUG*CC*GUG

Length

13 nucleotides

Bulged bases

6Z6K|1|C1|A|2657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Z6K|1|C1|C|2654
6Z6K|1|C1|U|2655
6Z6K|1|C1|A|2656
6Z6K|1|C1|A|2657
6Z6K|1|C1|G|2658
*
6Z6K|1|C1|U|2712
6Z6K|1|C1|U|2713
6Z6K|1|C1|G|2714
*
6Z6K|1|C1|C|2741
6Z6K|1|C1|C|2742
*
6Z6K|1|C1|G|2751
6Z6K|1|C1|U|2752
6Z6K|1|C1|G|2753

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LD

60S ribosomal protein L5

Chain LT

60S ribosomal protein L21-A

Chain Lo

60S ribosomal protein L42-A