J4_6Z6M_006

3D structure

PDB id

6Z6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

6Z6M|1|L5|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Z6M|1|L5|G|2618
6Z6M|1|L5|G|2619
*
6Z6M|1|L5|U|2637
6Z6M|1|L5|G|2638
6Z6M|1|L5|U|2639
6Z6M|1|L5|G|2640
6Z6M|1|L5|A|2641
6Z6M|1|L5|A|2642
*
6Z6M|1|L5|U|2692
6Z6M|1|L5|G|2693
6Z6M|1|L5|G|2694
6Z6M|1|L5|A|2695
6Z6M|1|L5|A|2696
6Z6M|1|L5|A|2697
6Z6M|1|L5|G|2698
*
6Z6M|1|L5|U|2718
6Z6M|1|L5|C|2719

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LU

60S ribosomal protein L22

Chain Lg

60S ribosomal protein L34

Chain Lk

60S ribosomal protein L38