J4_6Z6N_008

3D structure

PDB id

6Z6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

6Z6N|1|L5|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Z6N|1|L5|G|2618
6Z6N|1|L5|G|2619
*
6Z6N|1|L5|U|2637
6Z6N|1|L5|G|2638
6Z6N|1|L5|U|2639
6Z6N|1|L5|G|2640
6Z6N|1|L5|A|2641
6Z6N|1|L5|A|2642
*
6Z6N|1|L5|U|2692
6Z6N|1|L5|G|2693
6Z6N|1|L5|G|2694
6Z6N|1|L5|A|2695
6Z6N|1|L5|A|2696
6Z6N|1|L5|A|2697
6Z6N|1|L5|G|2698
*
6Z6N|1|L5|U|2718
6Z6N|1|L5|C|2719

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LU

60S ribosomal protein L22

Chain Lg

60S ribosomal protein L34

Chain Lk

60S ribosomal protein L38