J4_6Z6N_010

3D structure

PDB id

6Z6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

6Z6N|1|L5|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6Z6N_010 not in the Motif Atlas

Homologous match to J4_8C3A_007

Geometric discrepancy: 0.111

The information below is about J4_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Z6N|1|L5|C|3696
6Z6N|1|L5|U|3697
6Z6N|1|L5|G|3698
*
6Z6N|1|L5|C|3752
6Z6N|1|L5|G|3753
*
6Z6N|1|L5|C|3771
6Z6N|1|L5|U|3772
6Z6N|1|L5|U|3773
6Z6N|1|L5|A|3774
6Z6N|1|L5|A|3775
6Z6N|1|L5|G|3776
6Z6N|1|L5|G|3777
6Z6N|1|L5|U|3778
6Z6N|1|L5|A|3779
6Z6N|1|L5|G|3780
*
6Z6N|1|L5|U|3814
6Z6N|1|L5|G|3815
6Z6N|1|L5|A|3816
6Z6N|1|L5|A|3817
6Z6N|1|L5|U|3818
6Z6N|1|L5|G|3819

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA