J4_6ZJ3_006
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAA(PSU)G
- Length
- 21 nucleotides
- Bulged bases
- 6ZJ3|1|LH|PSU|2802
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6ZJ3_006 not in the Motif Atlas
- Homologous match to J4_8C3A_007
- Geometric discrepancy: 0.1541
- The information below is about J4_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZJ3|1|LH|C|2680
6ZJ3|1|LH|U|2681
6ZJ3|1|LH|G|2682
*
6ZJ3|1|LH|C|2736
6ZJ3|1|LH|G|2737
*
6ZJ3|1|LH|C|2755
6ZJ3|1|LH|U|2756
6ZJ3|1|LH|U|2757
6ZJ3|1|LH|A|2758
6ZJ3|1|LH|A|2759
6ZJ3|1|LH|G|2760
6ZJ3|1|LH|G|2761
6ZJ3|1|LH|U|2762
6ZJ3|1|LH|A|2763
6ZJ3|1|LH|G|2764
*
6ZJ3|1|LH|U|2798
6ZJ3|1|LH|G|2799
6ZJ3|1|LH|A|2800
6ZJ3|1|LH|A|2801
6ZJ3|1|LH|PSU|2802
6ZJ3|1|LH|G|2803
Current chains
- Chain LH
- LSU rRNA chain 7
Nearby chains
- Chain L3
- Ribosomal protein eL41
- Chain LI
- Large subunit ribosomal RNA; LSU rRNA
- Chain LP
- Ribosomal protein uL2
- Chain S1
- Small subunit ribosomal RNA; SSU rRNA
- Chain S3
- Transfer RNA; tRNA
Coloring options: