J4_6ZJ3_007
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- CUGAAG*CUGAUGCUGCG*CCGA(A2M)AC*GUG
- Length
- 27 nucleotides
- Bulged bases
- 6ZJ3|1|LI|G|3228, 6ZJ3|1|LI|A|3230, 6ZJ3|1|LI|U|3289, 6ZJ3|1|LI|C|3291, 6ZJ3|1|LI|G|3293
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZJ3|1|LI|C|3226
6ZJ3|1|LI|U|3227
6ZJ3|1|LI|G|3228
6ZJ3|1|LI|A|3229
6ZJ3|1|LI|A|3230
6ZJ3|1|LI|G|3231
*
6ZJ3|1|LI|C|3285
6ZJ3|1|LI|U|3286
6ZJ3|1|LI|G|3287
6ZJ3|1|LI|A|3288
6ZJ3|1|LI|U|3289
6ZJ3|1|LI|G|3290
6ZJ3|1|LI|C|3291
6ZJ3|1|LI|U|3292
6ZJ3|1|LI|G|3293
6ZJ3|1|LI|C|3294
6ZJ3|1|LI|G|3295
*
6ZJ3|1|LI|C|3311
6ZJ3|1|LI|C|3312
6ZJ3|1|LI|G|3313
6ZJ3|1|LI|A|3314
6ZJ3|1|LI|A2M|3315
6ZJ3|1|LI|A|3316
6ZJ3|1|LI|C|3317
*
6ZJ3|1|LI|G|3326
6ZJ3|1|LI|U|3327
6ZJ3|1|LI|G|3328
Current chains
- Chain LI
- LSU rRNA chain 8
Nearby chains
- Chain L4
- Ribosomal protein eL43
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain La
- Ribosomal protein uL15
- Chain Ld
- Ribosomal protein uL18
- Chain Le
- Ribosomal protein eL18
- Chain Lh
- Ribosomal protein eL21
- Chain Lq
- Ribosomal protein eL29
Coloring options: