J4_6ZJ3_008

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GCAUC*GGC*(OMG)AC*GAGAC

Length

16 nucleotides

Bulged bases

6ZJ3|1|LJ|A|3726

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZJ3|1|LJ|G|3599
6ZJ3|1|LJ|C|3600
6ZJ3|1|LJ|A|3601
6ZJ3|1|LJ|U|3602
6ZJ3|1|LJ|C|3603
*
6ZJ3|1|LJ|G|3631
6ZJ3|1|LJ|G|3632
6ZJ3|1|LJ|C|3633
*
6ZJ3|1|LJ|OMG|3688
6ZJ3|1|LJ|A|3689
6ZJ3|1|LJ|C|3690
*
6ZJ3|1|LJ|G|3725
6ZJ3|1|LJ|A|3726
6ZJ3|1|LJ|G|3727
6ZJ3|1|LJ|A|3728
6ZJ3|1|LJ|C|3729

Current chains

Chain LJ

LSU rRNA chain 9

Nearby chains

Chain LH

Large subunit ribosomal RNA; LSU rRNA

Chain LI

Large subunit ribosomal RNA; LSU rRNA

Chain LQ

Ribosomal protein uL3

Chain LW

Ribosomal protein uL13

Chain LY

Ribosomal protein uL14