J4_6ZJ3_009

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

C(OMC)UUA(OMC)A(PSU)C*G(A2M)C*GUAAC*GG

Length

19 nucleotides

Bulged bases

6ZJ3|1|S1|A|456

QA status

Modified nucleotides: OMC, PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ZJ3_009 not in the Motif Atlas

Homologous match to J4_8C3A_021

Geometric discrepancy: 0.2824

The information below is about J4_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78231.1

Basepair signature

cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW

Number of instances in this motif group

2

Unit IDs

6ZJ3|1|S1|C|98
6ZJ3|1|S1|OMC|99
6ZJ3|1|S1|U|100
6ZJ3|1|S1|U|101
6ZJ3|1|S1|A|102
6ZJ3|1|S1|OMC|103
6ZJ3|1|S1|A|104
6ZJ3|1|S1|PSU|105
6ZJ3|1|S1|C|106
*
6ZJ3|1|S1|G|406
6ZJ3|1|S1|A2M|407
6ZJ3|1|S1|C|408
*
6ZJ3|1|S1|G|454
6ZJ3|1|S1|U|455
6ZJ3|1|S1|A|456
6ZJ3|1|S1|A|457
6ZJ3|1|S1|C|458
*
6ZJ3|1|S1|G|480
6ZJ3|1|S1|G|481

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SE

Ribosomal protein eS4

Chain SK

Ribosomal protein eS8

Chain SP

Ribosomal protein uS12

Chain SU

Ribosomal protein uS17