J4_6ZJ3_011

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CUGCCAAAAG*CAAAGCGGUUUAUGCCU*GCAACG*CACCACCG

Length

41 nucleotides

Bulged bases

6ZJ3|1|S1|A|931, 6ZJ3|1|S1|U|932, 6ZJ3|1|S1|G|933, 6ZJ3|1|S1|A|949

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZJ3|1|S1|C|893
6ZJ3|1|S1|U|894
6ZJ3|1|S1|G|895
6ZJ3|1|S1|C|896
6ZJ3|1|S1|C|897
6ZJ3|1|S1|A|898
6ZJ3|1|S1|A|899
6ZJ3|1|S1|A|900
6ZJ3|1|S1|A|901
6ZJ3|1|S1|G|902
*
6ZJ3|1|S1|C|920
6ZJ3|1|S1|A|921
6ZJ3|1|S1|A|922
6ZJ3|1|S1|A|923
6ZJ3|1|S1|G|924
6ZJ3|1|S1|C|925
6ZJ3|1|S1|G|926
6ZJ3|1|S1|G|927
6ZJ3|1|S1|U|928
6ZJ3|1|S1|U|929
6ZJ3|1|S1|U|930
6ZJ3|1|S1|A|931
6ZJ3|1|S1|U|932
6ZJ3|1|S1|G|933
6ZJ3|1|S1|C|934
6ZJ3|1|S1|C|935
6ZJ3|1|S1|U|936
*
6ZJ3|1|S1|G|946
6ZJ3|1|S1|C|947
6ZJ3|1|S1|A|948
6ZJ3|1|S1|A|949
6ZJ3|1|S1|C|950
6ZJ3|1|S1|G|951
*
6ZJ3|1|S1|C|1000
6ZJ3|1|S1|A|1001
6ZJ3|1|S1|C|1002
6ZJ3|1|S1|C|1003
6ZJ3|1|S1|A|1004
6ZJ3|1|S1|C|1005
6ZJ3|1|S1|C|1006
6ZJ3|1|S1|G|1007

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SG

Ribosomal protein eS6

Chain Sg

Ribosomal protein eSEug1