J4_6ZJ3_014

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

AUAG*CAG*CGUGUCC*GU

Length

16 nucleotides

Bulged bases

6ZJ3|1|S4|U|8, 6ZJ3|1|S4|U|47, 6ZJ3|1|S4|C|48

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ZJ3_014 not in the Motif Atlas

Homologous match to J4_5E81_027

Geometric discrepancy: 0.3729

The information below is about J4_5E81_027

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.29

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

54

Unit IDs

6ZJ3|1|S4|A|7
6ZJ3|1|S4|U|8
6ZJ3|1|S4|A|9
6ZJ3|1|S4|G|10
*
6ZJ3|1|S4|C|25
6ZJ3|1|S4|A|26
6ZJ3|1|S4|G|27
*
6ZJ3|1|S4|C|43
6ZJ3|1|S4|G|44
6ZJ3|1|S4|U|45
6ZJ3|1|S4|G|46
6ZJ3|1|S4|U|47
6ZJ3|1|S4|C|48
6ZJ3|1|S4|C|49
*
6ZJ3|1|S4|G|65
6ZJ3|1|S4|U|66

Current chains

Chain S4

E-tRNA

Nearby chains

Chain L4

Ribosomal protein eL43

Chain SO

Ribosomal protein uS11