J4_6ZJ3_015
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- AUAG*CAG*CGUGUCCUUG*CCGAGU
- Length
- 23 nucleotides
- Bulged bases
- 6ZJ3|1|S3|U|8, 6ZJ3|1|S3|U|47, 6ZJ3|1|S3|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZJ3|1|S3|A|7
6ZJ3|1|S3|U|8
6ZJ3|1|S3|A|9
6ZJ3|1|S3|G|10
*
6ZJ3|1|S3|C|25
6ZJ3|1|S3|A|26
6ZJ3|1|S3|G|27
*
6ZJ3|1|S3|C|43
6ZJ3|1|S3|G|44
6ZJ3|1|S3|U|45
6ZJ3|1|S3|G|46
6ZJ3|1|S3|U|47
6ZJ3|1|S3|C|48
6ZJ3|1|S3|C|49
6ZJ3|1|S3|U|50
6ZJ3|1|S3|U|51
6ZJ3|1|S3|G|52
*
6ZJ3|1|S3|C|61
6ZJ3|1|S3|C|62
6ZJ3|1|S3|G|63
6ZJ3|1|S3|A|64
6ZJ3|1|S3|G|65
6ZJ3|1|S3|U|66
Current chains
- Chain S3
- P-tRNA
Nearby chains
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lc
- 60S ribosomal protein L10
- Chain S1
- Small subunit ribosomal RNA; SSU rRNA
- Chain SR
- Ribosomal protein uS13
- Chain SW
- Ribosomal protein uS19
- Chain Sa
- Ribosomal protein eS25
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