J4_6ZM7_009
3D structure
- PDB id
- 6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 6ZM7|1|L5|U|3818
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6ZM7_009 not in the Motif Atlas
- Homologous match to J4_8C3A_007
- Geometric discrepancy: 0.0965
- The information below is about J4_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZM7|1|L5|C|3696
6ZM7|1|L5|U|3697
6ZM7|1|L5|G|3698
*
6ZM7|1|L5|C|3752
6ZM7|1|L5|G|3753
*
6ZM7|1|L5|C|3771
6ZM7|1|L5|U|3772
6ZM7|1|L5|U|3773
6ZM7|1|L5|A|3774
6ZM7|1|L5|A|3775
6ZM7|1|L5|G|3776
6ZM7|1|L5|G|3777
6ZM7|1|L5|U|3778
6ZM7|1|L5|A|3779
6ZM7|1|L5|G|3780
*
6ZM7|1|L5|U|3814
6ZM7|1|L5|G|3815
6ZM7|1|L5|A|3816
6ZM7|1|L5|A|3817
6ZM7|1|L5|U|3818
6ZM7|1|L5|G|3819
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain CE
- Coiled-coil domain-containing protein 124
- Chain LA
- 60S ribosomal protein L8
- Chain Ln
- 60S ribosomal protein L41
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: