J4_6ZME_008

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

6ZME|1|L5|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZME|1|L5|G|2618
6ZME|1|L5|G|2619
*
6ZME|1|L5|U|2637
6ZME|1|L5|G|2638
6ZME|1|L5|U|2639
6ZME|1|L5|G|2640
6ZME|1|L5|A|2641
6ZME|1|L5|A|2642
*
6ZME|1|L5|U|2692
6ZME|1|L5|G|2693
6ZME|1|L5|G|2694
6ZME|1|L5|A|2695
6ZME|1|L5|A|2696
6ZME|1|L5|A|2697
6ZME|1|L5|G|2698
*
6ZME|1|L5|U|2718
6ZME|1|L5|C|2719

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LU

60S ribosomal protein L22

Chain Lg

60S ribosomal protein L34

Chain Lk

60S ribosomal protein L38