J4_6ZME_010

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

6ZME|1|L5|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ZME_010 not in the Motif Atlas

Homologous match to J4_8C3A_007

Geometric discrepancy: 0.0901

The information below is about J4_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZME|1|L5|C|3696
6ZME|1|L5|U|3697
6ZME|1|L5|G|3698
*
6ZME|1|L5|C|3752
6ZME|1|L5|G|3753
*
6ZME|1|L5|C|3771
6ZME|1|L5|U|3772
6ZME|1|L5|U|3773
6ZME|1|L5|A|3774
6ZME|1|L5|A|3775
6ZME|1|L5|G|3776
6ZME|1|L5|G|3777
6ZME|1|L5|U|3778
6ZME|1|L5|A|3779
6ZME|1|L5|G|3780
*
6ZME|1|L5|U|3814
6ZME|1|L5|G|3815
6ZME|1|L5|A|3816
6ZME|1|L5|A|3817
6ZME|1|L5|U|3818
6ZME|1|L5|G|3819

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA