J4_6ZMI_005
3D structure
- PDB id
- 6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CUC*GCC*GCGC*GGAGCG
- Length
- 16 nucleotides
- Bulged bases
- 6ZMI|1|L5|G|1271, 6ZMI|1|L5|C|1272
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZMI|1|L5|C|981
6ZMI|1|L5|U|982
6ZMI|1|L5|C|983
*
6ZMI|1|L5|G|1070
6ZMI|1|L5|C|1071
6ZMI|1|L5|C|1072
*
6ZMI|1|L5|G|1240
6ZMI|1|L5|C|1241
6ZMI|1|L5|G|1242
6ZMI|1|L5|C|1243
*
6ZMI|1|L5|G|1268
6ZMI|1|L5|G|1269
6ZMI|1|L5|A|1270
6ZMI|1|L5|G|1271
6ZMI|1|L5|C|1272
6ZMI|1|L5|G|1273
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LE
- 60S ribosomal protein L6
- Chain LF
- 60S ribosomal protein L7
- Chain Lb
- 60S ribosomal protein L29
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